Basic Information
Locus ID:
nbisL1-mrna-17081
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000000F_pilon | 1165096 | 1171871 | + | nbisL1-mrna-17081 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 41,059.71 Da | 45.91 | 87.00 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 305 | 353 | 2.6E-8 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 302 | 361 | 2.89E-15 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 44 | 254 | 1.44E-23 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 284 | 366 | 3.7E-15 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 25 | 272 | 1.7E-12 | IPR027267 |
| SMART | SM00326 | SH3_2 | 301 | 356 | 3.0E-13 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 298 | 357 | 19.742079 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 293 | - | - |
| Coils | Coil | Coil | 189 | 209 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 145 | 175 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31440.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_021662387.1 | SH3 domain-containing protein 1-like [Hevea brasiliensis] | 0 |
| Q9C865 | SH3 domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=SH3P1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6M5N6 | SH3 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_025861 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology