Basic Information
Locus ID:
nbisL1-mrna-17062
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001624F_pilon | 1253972 | 1259163 | - | nbisL1-mrna-17062 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 72,627.00 Da | 35.13 | 76.72 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 336 | 435 | 5.11608E-31 | IPR029413 |
| CDD | cd10320 | RGL4_N | 11 | 306 | 9.19025E-81 | - |
| CDD | cd10317 | RGL4_C | 447 | 633 | 2.43813E-58 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 9 | 205 | 1.5E-89 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 359 | 431 | 2.4E-24 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 445 | 632 | 2.8E-57 | IPR029411 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 442 | 633 | 1.11E-49 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 18 | 296 | 3.45E-5 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 336 | 428 | 1.14E-8 | IPR013784 |
| Gene3D | G3DSA:2.70.98.10 | - | 9 | 312 | 4.4E-8 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 334 | 432 | 1.3E-6 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 443 | 633 | 5.8E-19 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_021646095.1 | rhamnogalacturonate lyase B-like isoform X2 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A5N5NMI1 | rhamnogalacturonan endolyase OS=Salix brachista OX=2182728 GN=DKX38_002593 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology