Basic Information
Locus ID:
nbisL1-mrna-17060
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001624F_pilon | 1215500 | 1240234 | - | nbisL1-mrna-17060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 352,863.91 Da | 48.01 | 93.94 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 2970 | 3213 | 3.69947E-97 | IPR000569 |
| CDD | cd10014 | TFIIA_gamma_C | 57 | 85 | 4.81788E-13 | IPR015871 |
| CDD | cd10145 | TFIIA_gamma_N | 4 | 51 | 1.84177E-20 | IPR015872 |
| CDD | cd14327 | UBA_atUPL1_2_like | 1162 | 1198 | 7.13067E-16 | - |
| Pfam | PF14377 | Ubiquitin binding region | 2290 | 2315 | 1.6E-8 | IPR025527 |
| Pfam | PF02751 | Transcription initiation factor IIA, gamma subunit | 60 | 87 | 2.0E-12 | IPR015871 |
| Pfam | PF14377 | Ubiquitin binding region | 2328 | 2355 | 2.4E-11 | IPR025527 |
| Pfam | PF14377 | Ubiquitin binding region | 2362 | 2393 | 1.0E-6 | IPR025527 |
| Pfam | PF02268 | Transcription initiation factor IIA, gamma subunit, helical domain | 4 | 49 | 1.4E-19 | IPR015872 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 2983 | 3214 | 3.4E-66 | IPR000569 |
| Pfam | PF00627 | UBA/TS-N domain | 1158 | 1195 | 1.9E-7 | IPR015940 |
| Pfam | PF06025 | Domain of Unknown Function (DUF913) | 325 | 658 | 4.2E-64 | IPR010314 |
| Pfam | PF06012 | Domain of Unknown Function (DUF908) | 131 | 262 | 9.1E-14 | IPR010309 |
| SUPERFAMILY | SSF47396 | Transcription factor IIA (TFIIA), alpha-helical domain | 4 | 54 | 4.19E-15 | - |
| SUPERFAMILY | SSF46934 | UBA-like | 1142 | 1208 | 4.08E-16 | IPR009060 |
| SUPERFAMILY | SSF48371 | ARM repeat | 214 | 658 | 9.05E-8 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 2961 | 3207 | 8.89E-87 | IPR035983 |
| SUPERFAMILY | SSF50784 | Transcription factor IIA (TFIIA), beta-barrel domain | 52 | 90 | 4.19E-12 | IPR009088 |
| Gene3D | G3DSA:1.25.10.10 | - | 256 | 566 | 1.8E-6 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 3096 | 3215 | 1.4E-46 | - |
| Gene3D | G3DSA:1.10.287.190 | - | 3 | 54 | 1.6E-21 | IPR009083 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 2926 | 3047 | 1.2E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 1156 | 1229 | 7.8E-19 | - |
| Gene3D | G3DSA:6.10.250.1630 | - | 2327 | 2358 | 5.1E-6 | - |
| Gene3D | G3DSA:2.30.18.10 | - | 55 | 117 | 1.2E-14 | IPR009088 |
| SMART | SM00119 | hect_3 | 2895 | 3215 | 2.7E-68 | IPR000569 |
| SMART | SM00165 | uba_6 | 1159 | 1197 | 4.5E-11 | IPR015940 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 3027 | 3215 | 65.713295 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 2991 | 3024 | 14.560883 | IPR000569 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 1157 | 1198 | 14.715632 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2099 | 2126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2099 | 2117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1590 | 1606 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1882 | 1906 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2215 | 2291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1563 | 1585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2229 | 2265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1888 | 1906 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1563 | 1617 | - | - |
| Coils | Coil | Coil | 2592 | 2612 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55860.1 | ubiquitin-protein ligase 1. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_015579781.1 | E3 ubiquitin-protein ligase UPL2 [Ricinus communis] | 0 |
| Q8GY23 | E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana OX=3702 GN=UPL1 PE=1 SV=3 | 0 | |
| TrEMBL | B9SMZ3 | HECT-type E3 ubiquitin transferase OS=Ricinus communis OX=3988 GN=RCOM_0482820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg21280, jg21614, jg22646 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1154, gene_12129 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009079, Ah023597 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g005440, BVRB_4g090620 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18534, Sbi_jg28955, Sbi_jg2982, Sbi_jg36934 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4811, Seu_jg6898 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000946, GOSA_00017313 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl11833, Sgl15930, Sgl23580, Sgl23581, Sgl28781 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011427, gene:ENSEOMG00000015904 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0009790, CQ.Regalona.r1.1BG0015970 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30042170 |
| Apiaceae | Apium graveolens | 3 | Ag10G02843, Ag2G01711, Ag4G01891 |
| Arecaceae | Cocos nucifera | 4 | COCNU_01G006310, COCNU_02G014510, COCNU_11G011420 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103702442, gene-LOC103710828, gene-LOC103721479 ... |
| Asparagaceae | Asparagus officinalis | 5 | AsparagusV1_01.3576.V1.1, AsparagusV1_01.3578.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G09513, Ftri7G04341 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G55860.1, AT1G70320.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011171m.g.v1.0, Thhalv10011172m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g41460.v2.2, Sp6g10940.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g019570.2N, BniB04g019580.2N, BniB05g058900.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1493, Ceq03G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1657, Cgl03G1133 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno10g07430, gene.Cymno14g08200, gene.Cymno18g05190 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0006s00003.v1.0, Dusal.0006s00007.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g11030 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1803, nbisL1-mrna-9038 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG05.2045, evm.TU.LG06.244, evm.TU.LG09.1154 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00037172, Pov_00037932 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G11873, Lb4G23021, Lb4G23023 |
| Poaceae | Echinochloa crus-galli | 7 | AH03.1323, AH03.1324, AH05.3344, BH03.1456, BH05.3353 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0388780, gene-QOZ80_5BG0435490 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0452860.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002392, gene-QYE76_002393 |
| Poaceae | Oryza coarctata | 4 | Oco17G000920, Oco18G000990, Oco23G005360, Oco24G005230 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g07900.1, LOC_Os12g24080.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K086400 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G014830, Chr06G015240, Chr10G003670, Chr11G015210 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G211200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG036140, gene_TRIDC5AG020600 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G121600.1, TraesCS5B02G112800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb094520_P002, Zm00001eb133420_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12544 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25774 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.609, evm.TU.LG04.1615, evm.TU.LG09.2070 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g08450, gene.Posoc06g13710 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_7_RagTag.64, evm.TU.Scaffold_7_RagTag.898 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19367, nbisL1-mrna-19688, nbisL1-mrna-9401 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-4015, nbisL1-mrna-4933, nbisL1-mrna-9737 |
| Rhizophoraceae | Ceriops zippeliana | 6 | nbisL1-mrna-20564, nbisL1-mrna-20565, nbisL1-mrna-22342 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000002l.693, evm.TU.utg000018l.231 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00003277, Maker00010644, Maker00010697 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11491, nbisL1-mrna-13070, nbisL1-mrna-7997 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10148, nbisL1-mrna-17060, nbisL1-mrna-22585 |
| Salicaceae | Populus euphratica | 5 | populus_peu00891, populus_peu00892, populus_peu00893 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616848, gene-LOC132627653 |
| Solanaceae | Solanum chilense | 2 | SOLCI000395700, SOLCI002308300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107017094, gene-LOC107025338 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_13076, gene_17872, gene_3887 |
| Tamaricaceae | Tamarix chinensis | 3 | TC05G2598, TC06G0522, TC10G2282 |
| Zosteraceae | Zostera marina | 2 | Zosma03g00180.v3.1, Zosma05g30720.v3.1 |