Basic Information
Locus ID:
nbisL1-mrna-17011
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 22635085 | 22636503 | - | nbisL1-mrna-17011 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.49 | 32,781.42 Da | 40.21 | 92.37 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 242 | 284 | 1.17934E-17 | - |
| CDD | cd02123 | PA_C_RZF_like | 31 | 165 | 9.69502E-37 | IPR044744 |
| Pfam | PF02225 | PA domain | 59 | 139 | 6.9E-9 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 242 | 284 | 1.4E-12 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 79 | 146 | 4.45E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 232 | 290 | 2.71E-19 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 26 | 152 | 7.6E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 225 | 291 | 2.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 243 | 283 | 4.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 243 | 284 | 13.064645 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_015899589.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X2 [Ziziphus jujuba var. spinosa] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3BJ22 | Receptor-like proteiny region, transmembrane domain-and RING domain-containing protein 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110159pilonHSYRG00248 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology