Basic Information
Locus ID:
nbisL1-mrna-17008
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
free ubiquitin chain polymerization
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 6785027 | 6786157 | + | nbisL1-mrna-17008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 32,603.07 Da | 42.47 | 88.11 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 33 | 156 | 1.7E-19 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 163 | 4.07E-25 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 17 | 171 | 3.5E-22 | IPR016135 |
| SMART | SM00212 | ubc_7 | 5 | 165 | 1.6E-10 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 2 | 165 | 19.95647 | IPR000608 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_011073121.1 | ubiquitin-conjugating enzyme E2 27 isoform X2 [Sesamum indicum] | 0 |
| P52484 | Ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans OX=6239 GN=ubc-21 PE=3 SV=3 | 0 | |
| TrEMBL | A0A6A7GDJ0 | E2 ubiquitin-conjugating enzyme (Fragment) OS=Hirondellea gigas OX=1518452 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1172 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.235 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009039 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17008 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8822 |