Basic Information
Locus ID:
nbisL1-mrna-17006
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
26S proteasome non-atpase regulatory subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 22608238 | 22612976 | - | nbisL1-mrna-17006 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 50,306.71 Da | 40.14 | 82.83 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01452 | VWA_26S_proteasome_subunit | 1 | 182 | 4.50696E-102 | - |
| Pfam | PF02809 | Ubiquitin interaction motif | 290 | 301 | 0.97 | IPR003903 |
| Pfam | PF02809 | Ubiquitin interaction motif | 218 | 231 | 0.93 | IPR003903 |
| Pfam | PF02809 | Ubiquitin interaction motif | 319 | 333 | 0.065 | IPR003903 |
| Pfam | PF13519 | von Willebrand factor type A domain | 1 | 109 | 2.3E-26 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 1 | 170 | 1.33E-35 | IPR036465 |
| Gene3D | G3DSA:1.10.287.3990 | - | 214 | 300 | 1.3E-18 | - |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 1 | 180 | 1.9E-77 | IPR036465 |
| SMART | SM00726 | uim | 216 | 235 | 11.0 | IPR003903 |
| SMART | SM00327 | VWA_4 | 1 | 169 | 5.3E-13 | IPR002035 |
| SMART | SM00726 | uim | 318 | 337 | 1.4 | IPR003903 |
| SMART | SM00726 | uim | 286 | 305 | 2.6 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 216 | 235 | 8.934976 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 318 | 337 | 8.654174 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 286 | 305 | 9.480533 | IPR003903 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 1 | 183 | 11.573652 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 258 | - | - |
| Coils | Coil | Coil | 273 | 293 | - | - |
| Coils | Coil | Coil | 226 | 246 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38630.1 | regulatory particle non-ATPase 10. Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities | 0 |
| RefSeq | XP_021604815.1 | 26S proteasome non-ATPase regulatory subunit 4 homolog isoform X2 [Manihot esculenta] | 0 |
| P55034 | 26S proteasome non-ATPase regulatory subunit 4 homolog OS=Arabidopsis thaliana OX=3702 GN=RPN10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9WDP5 | VWFA domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_02G137100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17219, jg39596 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24120 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026845 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g130470 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13725, Sbi_jg52191 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9658 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017536 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33267, Sgl38599, Sgl38657 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002300, gene:ENSEOMG00000003765 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0019950, CQ.Regalona.r1.6BG0021020 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30111350, pistato.v30293450 |
| Apiaceae | Apium graveolens | 1 | Ag4G00393 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G002300, COCNU_09G004270, COCNU_10G001630 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103700880, gene-LOC103706166, gene-LOC103720462 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2146.V1.1, AsparagusV1_10.196.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G23254 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G38630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025445m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g37150.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g089600.2N, BniB03g015690.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0159 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0174 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g05970 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0070s00022.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g02290 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.2779, evm.TU.LG08.297, evm.TU.LG09.226 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00020382, Pov_00020407 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06149, Lb3G16965, Lb3G18067 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.2595, AH01.4370, BH01.2918, BH01.2919, CH01.3113 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0240610, gene-QOZ80_3BG0287420 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0392700.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069345 |
| Poaceae | Oryza coarctata | 2 | Oco05G007870, Oco06G008170 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g13970.1, LOC_Os10g05180.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G132600, gene-BS78_01G421300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0101997 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G029160, Chr04G000460, Chr07G000540, Chr12G010330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G394400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG010410, gene_TRIDC4BG040100 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G071300.2, TraesCS4B02G227200.2 ... |
| Poaceae | Zea mays | 4 | Zm00001eb010400_P001, Zm00001eb026350_P004 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2310, nbis-gene-3910 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1670, Zma_g4043 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1559, evm.TU.LG05.334, evm.TU.LG12.230 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g09560, gene.Posoc09g06830 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.87, evm.TU.Scaffold_3_RagTag.88 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-17006, nbisL1-mrna-5102, nbisL1-mrna-6040 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13359 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-3254, nbisL1-mrna-5887, nbisL1-mrna-9366 |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000019l.489, evm.TU.utg000009l.1169 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007619, Maker00016934 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15669, nbisL1-mrna-4630, nbisL1-mrna-6566 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22444, nbisL1-mrna-2991 |
| Salicaceae | Populus euphratica | 3 | populus_peu08723, populus_peu23270, populus_peu36630 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617346, gene-LOC132621678 |
| Solanaceae | Solanum chilense | 1 | SOLCI001430300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011568 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_16257, gene_2859 |
| Zosteraceae | Zostera marina | 1 | Zosma05g31230.v3.1 |