Basic Information
Locus ID:
nbisL1-mrna-17005
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 6636642 | 6637257 | + | nbisL1-mrna-17005 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 16,072.03 Da | 36.94 | 82.64 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006301009.1 | E3 ubiquitin-protein ligase ORTHRUS 2 [Capsella rubella] | 0 |
| TrEMBL | R0GDP5 | RING-type E3 ubiquitin transferase OS=Capsella rubella OX=81985 GN=CARUB_v10021399mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18373, jg34442 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19762 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001521 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg30851, Sbi_jg30852, Sbi_jg30853, Sbi_jg30854 ... |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28291 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004867 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54951, Sgl60210 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004456, gene:ENSEOMG00000022957 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0018120, CQ.Regalona.r1.5BG0019260 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30012630, pistato.v30150320 |
| Apiaceae | Apium graveolens | 5 | Ag10G00146, Ag4G02166, Ag4G02167, Ag5G00218, Ag8G02293 |
| Arecaceae | Cocos nucifera | 4 | COCNU_15G005780, scaffold001173G000010 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702448, gene-LOC103708115, gene-LOC103724070 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.1381.V1.1, AsparagusV1_04.1580.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G20519, Ftri13G21510, Ftri3G17037 |
| Brassicaceae | Arabidopsis thaliana | 6 | AT1G57800.1, AT1G57820.1, AT1G66040.1, AT1G66050.1 ... |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000084m.g.v1.0, Thhalv10000657m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 5 | Sp1g40830.v2.2, Sp4g01540.v2.2, Sp4g04310.v2.2 ... |
| Brassicaceae | Brassica nigra | 6 | BniB02g018820.2N, BniB02g023540.2N, BniB02g023570.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1932, Ceq07G0931 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G2097, Cgl07G0976 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g02020, gene.Cymno07g03030 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0188s00016.v1.0, Dusal.0767s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g26300, gene.Thate08g08150, gene.Thate08g08160 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.551, evm.TU.LG10.269 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00033006, Pov_00033473, Pov_00034139, Pov_00041321 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08931, Lb2G08937 |
| Poaceae | Echinochloa crus-galli | 10 | AH05.1221, AH05.506, BH05.1258, BH05.553, CH03.1082 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_5AG0378020, gene-QOZ80_5AG0408960 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0000630.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_036803, gene-QYE76_058630 |
| Poaceae | Oryza coarctata | 2 | Oco09G000090, Oco10G000150 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g22240.1, LOC_Os05g01230.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_02G116300, gene-BS78_02G116400, gene-BS78_K283300 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0500024, Pt_Chr0501852, Pt_Chr0600910 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G014260, Chr0G017890, Chr12G022610, Chr18G003230 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G016200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG000340, gene_TRIDC1BG001330 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G005700.1, TraesCS1B02G007900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb267610_P002, Zm00001eb304730_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18432, nbis-gene-48834 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26233, Zma_g27516 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2730, evm.TU.LG02.154, evm.TU.LG09.1392 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g04440, gene.Posoc02g05620, gene.Posoc05g05850 ... |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.931, evm.TU.Scaffold_15_RagTag.932 ... |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-23301, nbisL1-mrna-26702, nbisL1-mrna-27117 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10622, nbisL1-mrna-11411, nbisL1-mrna-11412 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-14569, nbisL1-mrna-15485, nbisL1-mrna-15486 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.522, evm.TU.utg000013l.20 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002594, Maker00006471 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-11129, nbisL1-mrna-17005, nbisL1-mrna-23165 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-16056, nbisL1-mrna-17606, nbisL1-mrna-24760 ... |
| Salicaceae | Populus euphratica | 2 | populus_peu03909, populus_peu34735 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640810 |
| Solanaceae | Solanum chilense | 1 | SOLCI006477600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107020773, gene-LOC114077251 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_1175, gene_15409, gene_16694 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2407, TC09G0753 |
| Zosteraceae | Zostera marina | 4 | Zosma01g25690.v3.1, Zosma04g17410.v3.1, Zosma04g17420.v3.1 ... |