Basic Information
Locus ID:
nbisL1-mrna-1700
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 7931729 | 7934568 | - | nbisL1-mrna-1700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 36,865.50 Da | 44.95 | 67.31 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 59 | 97 | 4.07439E-14 | - |
| CDD | cd03829 | Sina | 175 | 303 | 3.70493E-67 | - |
| Pfam | PF03145 | Seven in absentia protein family | 103 | 302 | 4.2E-80 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 51 | 100 | 4.5E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 114 | 306 | 2.68E-49 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 113 | 3.0E-7 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 302 | 3.0E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 165 | 9.5E-18 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 61 | 97 | 9.464913 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 114 | 174 | 14.432957 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_021688197.1 | E3 ubiquitin-protein ligase SINAT3 isoform X1 [Hevea brasiliensis] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KBS4 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology