Basic Information
Locus ID:
nbisL1-mrna-16970
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 22328293 | 22335856 | + | nbisL1-mrna-16970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 82,383.05 Da | 54.44 | 78.15 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 40 | 241 | 2.01484E-103 | - |
| CDD | cd18794 | SF2_C_RecQ | 242 | 370 | 1.58189E-56 | - |
| Pfam | PF16124 | RecQ zinc-binding | 374 | 445 | 3.3E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 55 | 221 | 1.2E-18 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 268 | 359 | 4.8E-8 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 92 | 382 | 9.98E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 242 | 463 | 1.7E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 11 | 241 | 1.5E-87 | IPR027417 |
| SMART | SM00487 | ultradead3 | 47 | 250 | 3.5E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 285 | 361 | 5.5E-13 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 41 | 448 | 2.3E-132 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 59 | 234 | 23.64975 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 254 | 405 | 11.619335 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 703 | 739 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 703 | 729 | - | - |
| Coils | Coil | Coil | 567 | 587 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_021649893.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Hevea brasiliensis] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JLS8 | ATP-dependent DNA helicase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology