Basic Information
Locus ID:
nbisL1-mrna-16963
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
CHIA1
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 22295761 | 22297551 | + | nbisL1-mrna-16963 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 33,554.07 Da | 29.63 | 61.45 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00035 | ChtBD1 | 22 | 58 | 1.20537E-15 | - |
| CDD | cd00325 | chitinase_GH19 | 75 | 303 | 4.39004E-114 | - |
| Pfam | PF00182 | Chitinase class I | 74 | 303 | 1.5E-129 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 21 | 58 | 1.1E-13 | IPR001002 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 21 | 62 | 3.4E-12 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 71 | 309 | 4.78E-109 | IPR023346 |
| Gene3D | G3DSA:3.30.60.10 | - | 20 | 58 | 3.6E-15 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 79 | 309 | 7.3E-120 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 157 | 212 | 7.3E-120 | - |
| SMART | SM00270 | ChitinBD_3 | 21 | 58 | 1.7E-17 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 310 | 2.4E-126 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 19 | 60 | 10.61235 | IPR001002 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 216 | 226 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 92 | 114 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 37 | 44 | 4.3E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 29 | 37 | 4.3E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 44 | 51 | 4.3E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_015576332.2 | endochitinase [Ricinus communis] | 0 |
| P36907 | Endochitinase OS=Pisum sativum OX=3888 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T1QFD3 | Chitin-binding type-1 domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_05G050500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology