Basic Information
Locus ID:
nbisL1-mrna-1695
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RAVE protein 1 C terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 8017943 | 8031703 | - | nbisL1-mrna-1695 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 279,544.75 Da | 40.44 | 88.67 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12234 | RAVE protein 1 C terminal | 947 | 1407 | 9.8E-70 | IPR022033 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2433 | 2465 | 0.0018 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2204 | 2521 | 2.98E-25 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 483 | 816 | 4.0E-5 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 36 | 790 | 3.3E-14 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 39 | 304 | 3.8E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 447 | 877 | 6.8E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2196 | 2514 | 3.8E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 2245 | 2280 | 0.31 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2426 | 2465 | 7.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2336 | 2382 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 170 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2489 | 2523 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 81 | 123 | 49.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 232 | 283 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 757 | 802 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2191 | 2228 | 67.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2291 | 2331 | 62.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 709 | 745 | 8.7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 2433 | 2465 | 10.311051 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2433 | 2474 | 13.215325 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46560.2 | - | 0 |
| RefSeq | XP_021635930.1 | uncharacterized protein LOC110632123 isoform X1 [Hevea brasiliensis] | 0 |
| Q6PNC0 | DmX-like protein 1 OS=Mus musculus OX=10090 GN=Dmxl1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JY35 | Uncharacterized protein MANES_01G244500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg29472, jg29473 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23522 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022830 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g002820 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg3912, Sbi_jg49135 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6105 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000609 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10879, Sgl16234 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014876, gene:ENSEOMG00000035105 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2BG0026440 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30005980 |
| Apiaceae | Apium graveolens | 8 | Ag6G00230, AgUnG01610, AgUnG01611, AgUnG01612, AgUnG01613 ... |
| Arecaceae | Cocos nucifera | 1 | scaffold017018G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713736 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2062.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G00244 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G46560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001279m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g28610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniS02554g070.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1314 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1468 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g04090 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0182s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g23500, gene.Thate08g18210, gene.Thate09g08140 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.679 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00017990 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31423 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2003, BH02.2050, CH02.2223 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0265040.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053283 |
| Poaceae | Oryza coarctata | 2 | Oco01G012480, Oco02G012610 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g37120.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G163200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603024 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G017930, Chr05G016080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G348500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG029450, gene_TRIDC3BG032680 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G201200.1, TraesCS3B02G224700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb356500_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47370 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2136, evm.TU.LG06.180 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g04810 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.616 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21599 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9620 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7415, nbisL1-mrna-7420 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.198 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017714 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1695 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5422 |
| Salicaceae | Populus euphratica | 2 | populus_peu31535, populus_peu31536 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645419 |
| Solanaceae | Solanum chilense | 1 | SOLCI000592400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003069 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_716 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1995 |
| Zosteraceae | Zostera marina | 1 | Zosma05g12540.v3.1 |