Basic Information
Locus ID:
nbisL1-mrna-16947
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 2993842 | 2995002 | + | nbisL1-mrna-16947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.15 | 42,496.98 Da | 69.73 | 62.93 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 194 | 235 | 1.8997E-23 | - |
| Pfam | PF13639 | Ring finger domain | 193 | 235 | 2.1E-10 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 265 | 353 | 9.2E-20 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 8 | 39 | 2.3E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 174 | 240 | 1.39E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 241 | 2.0E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 194 | 234 | 2.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 194 | 235 | 12.135206 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_021626230.1 | probable E3 ubiquitin-protein ligase RHC2A [Manihot esculenta] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9V4B0 | RING-type E3 ubiquitin transferase OS=Manihot esculenta OX=3983 GN=MANES_10G027900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology