Basic Information
Locus ID:
nbisL1-mrna-16914
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002183F_pilon | 1314590 | 1325532 | - | nbisL1-mrna-16914 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 148,971.98 Da | 49.59 | 78.83 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1176 | 1296 | 3.24167E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 577 | 909 | 9.94012E-82 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1185 | 1286 | 4.7E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 598 | 986 | 4.3E-66 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 917 | 1343 | 6.94E-55 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1037 | 1082 | 1.72E-7 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 563 | 909 | 1.3E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 788 | 922 | 8.9E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 550 | 638 | 1.0E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 1167 | 1341 | 2.2E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 670 | 763 | 3.8E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1029 | 1085 | 5.4E-8 | IPR013083 |
| SMART | SM00487 | ultradead3 | 573 | 888 | 3.2E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1203 | 1286 | 6.0E-18 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1180 | 1339 | 15.388741 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 689 | 871 | 11.540216 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1048 | 1057 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 495 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021688826.1 | - | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KS41 | Uncharacterized protein LOC105649495 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology