Basic Information
Locus ID:
nbisL1-mrna-16913
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000159F_pilon | 3013682 | 3019104 | - | nbisL1-mrna-16913 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 47,448.77 Da | 39.95 | 86.10 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 61 | 142 | 4.7E-31 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 145 | 182 | 4.4E-12 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 216 | 341 | 6.1E-49 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 343 | 397 | 4.58E-8 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 61 | 341 | 7.39E-40 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 144 | 189 | 2.3E-6 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 85 | 143 | 1.3E-18 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 193 | 409 | 4.8E-57 | IPR027417 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 89 | 266 | 18.72533 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 275 | 346 | 27.150829 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 287 | 295 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 163 | 192 | 3.5E-41 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 317 | 346 | 3.5E-41 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 284 | 312 | 3.5E-41 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 370 | 387 | 3.5E-41 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 129 | 158 | 3.5E-41 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 55 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_021668470.1 | DNA repair protein recA homolog 3, mitochondrial-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JTG1 | DNA repair protein recA homolog 3 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology