Basic Information
Locus ID:
nbisL1-mrna-16912
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Inactive serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 21791768 | 21800656 | + | nbisL1-mrna-16912 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 184,600.06 Da | 53.76 | 91.81 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06071 | Beach | 334 | 564 | 2.11084E-77 | IPR000409 |
| CDD | cd00180 | PKc | 191 | 270 | 4.15074E-15 | - |
| Pfam | PF00069 | Protein kinase domain | 187 | 269 | 3.9E-9 | IPR000719 |
| Pfam | PF02138 | Beige/BEACH domain | 334 | 545 | 3.6E-42 | IPR000409 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1262 | 1561 | 1.53E-29 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 190 | 279 | 7.79E-18 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 702 | 798 | 1.48E-11 | IPR011009 |
| SUPERFAMILY | SSF81837 | BEACH domain | 321 | 564 | 2.88E-73 | IPR036372 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 686 | 784 | 9.6E-12 | - |
| Gene3D | G3DSA:1.10.1540.10 | BEACH domain | 326 | 582 | 3.0E-59 | IPR036372 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 184 | 292 | 1.1E-12 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1446 | 1629 | 3.9E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1257 | 1442 | 1.1E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1486 | 1524 | 3.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1384 | 1425 | 470.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 134 | 776 | 5.0E-5 | IPR000719 |
| SMART | SM01026 | Beach_2 | 332 | 564 | 1.6E-87 | IPR000409 |
| SMART | SM00320 | WD40_4 | 1260 | 1303 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1306 | 1343 | 0.026 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1493 | 1526 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1493 | 1526 | 9.071966 | - |
| ProSiteProfiles | PS50197 | BEACH domain profile. | 320 | 592 | 18.73254 | IPR000409 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1511 | 1525 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 98 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18525.1 | protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases. | 0 |
| RefSeq | XP_024465691.2 | - | 0 |
| F4JY12 | Protein GFS12 OS=Arabidopsis thaliana OX=3702 GN=GFS12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K6J6 | Putative inactive serine/threonine-protein kinase lvsG isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15273 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2739 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019921 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g059860 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg38205, Sbi_jg6336, Sbi_jg6337 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15518, Seu_jg15519 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003668 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01617, Sgl06781, Sgl14571, Sgl19743, Sgl38309 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014373, gene:ENSEOMG00000031968 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0012530, CQ.Regalona.r1.3BG0012630 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30232300 |
| Apiaceae | Apium graveolens | 1 | Ag5G01783 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G000490 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721591, gene-LOC113463699 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3218.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA31678 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G18525.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012423m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g25800.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g044210.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1414 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1506 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g00260 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g00690 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG11.1438, evm.TU.LG11.274 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026336 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01271, Lb1G01275 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.1522, CH02.1741 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_052776, gene-QYE76_052800 |
| Poaceae | Oryza coarctata | 1 | Oco02G009710 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g22390.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G141800, gene-BS78_03G144300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603612, Pt_Chr0603624 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G022450, Chr05G013370 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G572000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC7AG048410, gene_TRIDC7BG032450 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G346600.2, TraesCS7B02G236400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb131030_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6493 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10254 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1600, evm.TU.LG11.955 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g34250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.1060 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16912 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15943 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17343 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.180 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012235 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8580 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23046 |
| Salicaceae | Populus euphratica | 1 | populus_peu20733 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604475 |
| Solanaceae | Solanum chilense | 1 | SOLCI005873100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006610 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6456 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1373 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26660.v3.1 |