Basic Information
Locus ID:
nbisL1-mrna-16903
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002183F_pilon | 1233414 | 1239795 | - | nbisL1-mrna-16903 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 90,007.60 Da | 56.20 | 77.39 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 118 | 250 | 1.4E-5 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 685 | 747 | 6.7E-5 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 578 | 610 | 1.82E-5 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 3 | 254 | 5.49E-15 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 680 | 759 | 3.31E-12 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 1 | 283 | 9.3E-24 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 677 | 758 | 2.6E-8 | - |
| SMART | SM00358 | DRBM_3 | 683 | 751 | 2.1E-4 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 565 | 611 | 2.1 | IPR014720 |
| SMART | SM00577 | forpap2 | 61 | 257 | 4.3E-13 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 582 | 612 | 9.027947 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 682 | 752 | 11.115709 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 2 | 275 | 14.145586 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 761 | 801 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 562 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 413 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_021670439.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X5 [Hevea brasiliensis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LPS0 | protein-serine/threonine phosphatase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology