Basic Information
Locus ID:
nbisL1-mrna-1687
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 8098874 | 8104868 | - | nbisL1-mrna-1687 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 118,544.79 Da | 50.48 | 104.76 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 325 | 366 | 2.02719E-20 | - |
| Pfam | PF04564 | U-box domain | 325 | 391 | 3.6E-17 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 842 | 1057 | 3.1E-15 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 313 | 391 | 1.92E-24 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 494 | 902 | 1.27E-31 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 75 | 188 | 9.2E-8 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 400 | 492 | 1.1E-6 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 690 | 921 | 2.3E-21 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 934 | 1065 | 2.5E-12 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 493 | 689 | 1.1E-22 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 299 | 399 | 4.8E-25 | IPR013083 |
| SMART | SM00185 | arm_5 | 591 | 631 | 1.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 812 | 858 | 220.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 727 | 767 | 120.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 979 | 1019 | 200.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 324 | 387 | 2.0E-23 | IPR003613 |
| SMART | SM00185 | arm_5 | 425 | 465 | 96.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 937 | 975 | 320.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 550 | 590 | 220.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 602 | 644 | 8.8024 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 320 | 394 | 30.50174 | IPR003613 |
| Coils | Coil | Coil | 127 | 147 | - | - |
| Coils | Coil | Coil | 404 | 424 | - | - |
| Coils | Coil | Coil | 255 | 282 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_011023128.1 | PREDICTED: U-box domain-containing protein 44-like [Populus euphratica] | 0 |
| Q10FT0 | U-box domain-containing protein 24 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JR89 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |