Basic Information
Locus ID:
nbisL1-mrna-16864
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 21326396 | 21328070 | + | nbisL1-mrna-16864 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 61,041.20 Da | 43.48 | 90.83 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 284 | 412 | 4.1E-14 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 52 | 219 | 1.02E-11 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 241 | 505 | 7.3E-25 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 343 | 412 | 8.0E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 215 | 2.3E-13 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 238 | 339 | 6.0E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 413 | 513 | 5.1E-7 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 263 | 531 | 11.820985 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20790.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_021640368.1 | putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Hevea brasiliensis] | 0 |
| Q9LDN1 | Putative cysteine-rich receptor-like protein kinase 33 OS=Arabidopsis thaliana OX=3702 GN=CRK33 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2C9VQD0 | Protein kinase domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_06G051900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20839 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30077740 |
| Apiaceae | Apium graveolens | 1 | Ag7G01839 |
| Arecaceae | Cocos nucifera | 1 | scaffold007984G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719634 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G20790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027352m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g18860.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g070950.2N, BniB03g061230.2N, BniB05g016160.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0706 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG12.1104, evm.TU.LG12.1107 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00038579, Pov_00038580 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g06810 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.1024 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16864 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5711 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17313 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.152 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8606 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23018 |
| Salicaceae | Populus euphratica | 1 | populus_peu17179 |