Basic Information
Locus ID:
nbisL1-mrna-16843
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000159F_pilon | 2555905 | 2557101 | - | nbisL1-mrna-16843 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 45,306.64 Da | 59.94 | 79.09 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 91 | 134 | 1.4131E-20 | - |
| Pfam | PF13639 | Ring finger domain | 91 | 134 | 8.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 71 | 140 | 2.83E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 143 | 1.7E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 92 | 133 | 1.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 92 | 134 | 12.710573 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 323 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021641703.1 | E3 ubiquitin-protein ligase ATL42-like [Hevea brasiliensis] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6P5ZQ49 | E3 ubiquitin-protein ligase ATL42-like OS=Durio zibethinus OX=66656 GN=LOC111303182 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology