Basic Information
Locus ID:
nbisL1-mrna-16841
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Suppressor of mec-8 and unc-52 protein homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 20926468 | 20935844 | + | nbisL1-mrna-16841 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 65,787.96 Da | 43.04 | 90.52 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 398 | 435 | 3.4E-4 | IPR001680 |
| Pfam | PF17814 | LisH-like dimerisation domain | 7 | 36 | 2.0E-15 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 307 | 1.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 328 | 354 | 0.044 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 575 | 9.42E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 384 | 576 | 2.8E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 262 | 359 | 1.0E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 491 | 533 | 4.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 307 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 536 | 575 | 0.22 | IPR001680 |
| SMART | SM00668 | ctlh | 40 | 92 | 4.4E-4 | IPR006595 |
| SMART | SM00320 | WD40_4 | 443 | 489 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 318 | 357 | 0.021 | IPR001680 |
| SMART | SM00667 | Lish | 6 | 38 | 4.5E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 397 | 437 | 1.7E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 543 | 576 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 40 | 92 | 9.592213 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 6 | 38 | 10.141733 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 275 | 307 | 9.071966 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 543 | 576 | 8.781968 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 405 | 435 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 275 | 316 | 11.243651 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73720.1 | transducin family protein / WD-40 repeat family protein. Encodes SMU1, a protein involved in RNA splicing. | 0 |
| RefSeq | XP_022963273.1 | suppressor of mec-8 and unc-52 protein homolog 1 [Cucurbita moschata] | 0 |
| Q8W117 | Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SMU1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D6MS74 | WD40 repeat-containing protein SMU1 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d040689 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12253, jg23304 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10305 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005479 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g078600 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17694, Sbi_jg62366 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg936 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007292 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23991, Sgl29170 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009338, gene:ENSEOMG00000030219 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0005720, CQ.Regalona.r1.4BG0005830 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30243340 |
| Apiaceae | Apium graveolens | 1 | Ag11G03977 |
| Arecaceae | Cocos nucifera | 1 | scaffold004145G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718159 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.222.V1.1, AsparagusV1_07.1097.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G14775, Ftri1G00515 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G73720.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018372m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g28910.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g038750.2N, BniB03g052110.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1698 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1761 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g05250 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0066s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g02690 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1168 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037590 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37478, Lb5G29337 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1501, BH02.1576, CH02.1723 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0015150, gene-QOZ80_1BG0064020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0259260.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_052755 |
| Poaceae | Oryza coarctata | 2 | Oco01G009310, Oco02G009600 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g21940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G140200 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0603582, Pt_Chr0603668, Pt_Chr0603671, Pt_Chr0603674 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G022330, Chr03G007550, Chr05G013260, Chr06G021250 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G332200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG028410, gene_TRIDC3BG033020 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G197200.1, TraesCS3B02G226600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb130810_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6511 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10245 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1204, evm.TU.LG22.119 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g10480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.993 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16841 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13062 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17288 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.144 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012218 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8617 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22994 |
| Salicaceae | Populus euphratica | 2 | populus_peu00119, populus_peu17184 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644465 |
| Solanaceae | Solanum chilense | 1 | SOLCI006452900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023840 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17016 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1491 |
| Zosteraceae | Zostera marina | 1 | Zosma01g39070.v3.1 |