Basic Information
Locus ID:
nbisL1-mrna-16814
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002183F_pilon | 363707 | 367683 | + | nbisL1-mrna-16814 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 63,496.70 Da | 26.59 | 89.88 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 28 | 189 | 2.91321E-90 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 387 | 569 | 3.77649E-87 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 431 | 557 | 2.9E-15 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 222 | 339 | 1.4E-21 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 25 | 192 | 3.0E-34 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 25 | 204 | 5.89E-44 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 217 | 364 | 6.98E-34 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 387 | 581 | 4.29E-42 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 380 | 568 | 1.7E-56 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 22 | 197 | 8.4E-60 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 211 | 374 | 1.7E-42 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 20 | 581 | 2.3E-209 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_021636561.1 | pyruvate decarboxylase 1-like [Hevea brasiliensis] | 0 |
| P51850 | Pyruvate decarboxylase 1 OS=Pisum sativum OX=3888 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2ISH4 | pyruvate decarboxylase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology