Basic Information
Locus ID:
nbisL1-mrna-16806
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
cationic amino acid transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 20522915 | 20525662 | + | nbisL1-mrna-16806 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 64,050.44 Da | 34.68 | 109.47 | 0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13520 | Amino acid permease | 74 | 477 | 6.4E-45 | IPR002293 |
| Pfam | PF13906 | C-terminus of AA_permease | 513 | 563 | 1.1E-17 | IPR029485 |
| Gene3D | G3DSA:1.20.1740.10 | Amino acid/polyamine transporter I | 68 | 496 | 4.5E-96 | - |
| PIRSF | PIRSF006060 | AA_transporter | 456 | 575 | 0.24 | - |
| PIRSF | PIRSF006060 | AA_transporter | 53 | 479 | 4.6E-72 | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21120.1 | amino acid transporter 1. Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. | 0 |
| RefSeq | XP_021654573.1 | cationic amino acid transporter 1-like [Hevea brasiliensis] | 0 |
| Q84MA5 | Cationic amino acid transporter 1 OS=Arabidopsis thaliana OX=3702 GN=CAT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JKU8 | Cationic amino acid transporter 1-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology