Basic Information
Locus ID:
nbisL1-mrna-16785
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000159F_pilon | 2182849 | 2186379 | + | nbisL1-mrna-16785 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 36,235.24 Da | 36.42 | 93.26 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 264 | 305 | 8.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 255 | 311 | 5.65E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 240 | 315 | 1.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 264 | 304 | 2.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 264 | 305 | 11.707369 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_012466321.1 | E3 ubiquitin-protein ligase At4g11680 [Gossypium raimondii] | 0 |
| Q8LDB8 | E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2IX08 | RING-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.380 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13157 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3750 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16785 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.257 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014716 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16516 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14756, nbisL1-mrna-14757 |