Basic Information
Locus ID:
nbisL1-mrna-16774
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000649F_pilon | 2058062 | 2062189 | - | nbisL1-mrna-16774 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 38,176.00 Da | 42.23 | 73.05 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 71 | 109 | 2.1449E-14 | - |
| CDD | cd03829 | Sina | 187 | 315 | 1.82104E-68 | - |
| Pfam | PF03145 | Seven in absentia protein family | 115 | 314 | 1.5E-79 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 62 | 115 | 8.25E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 126 | 318 | 9.81E-50 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 177 | 1.9E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 178 | 314 | 2.0E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 125 | 3.0E-6 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 126 | 186 | 14.023392 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 73 | 109 | 9.464913 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27880.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_007039050.1 | PREDICTED: E3 ubiquitin-protein ligase SINAT5 [Theobroma cacao] | 0 |
| Q9STN8 | E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana OX=3702 GN=SINAT4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MNT4 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology