Basic Information
Locus ID:
nbisL1-mrna-16773
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Calcineurin B-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000649F_pilon | 2048743 | 2051011 | - | nbisL1-mrna-16773 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 24,216.19 Da | 40.26 | 87.42 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 108 | 178 | 1.24402E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 108 | 177 | 1.8E-10 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 21 | 202 | 1.07E-43 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 18 | 211 | 3.3E-67 | - |
| SMART | SM00054 | efh_1 | 152 | 180 | 0.47 | IPR002048 |
| SMART | SM00054 | efh_1 | 108 | 136 | 1.6 | IPR002048 |
| SMART | SM00054 | efh_1 | 71 | 99 | 7.2 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 148 | 183 | 11.277538 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 104 | 139 | 11.640179 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 67 | 102 | 10.635944 | IPR002048 |
| PRINTS | PR00450 | Recoverin family signature | 75 | 96 | 5.7E-9 | - |
| PRINTS | PR00450 | Recoverin family signature | 168 | 188 | 5.7E-9 | - |
| PRINTS | PR00450 | Recoverin family signature | 122 | 140 | 5.7E-9 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04010 (MAPK signaling pathway)
map04010 (MAPK signaling pathway)
ko04020 (Calcium signaling pathway)
map04020 (Calcium signaling pathway)
ko04022 (cGMP-PKG signaling pathway)
map04022 (cGMP-PKG signaling pathway)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04218 (Cellular senescence)
map04218 (Cellular senescence)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04370 (VEGF signaling pathway)
map04370 (VEGF signaling pathway)
map04650 (Natural killer cell mediated cytotoxicity)
map04658 (Th1 and Th2 cell differentiation)
map04659 (Th17 cell differentiation)
map04660 (T cell receptor signaling pathway)
map04662 (B cell receptor signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24270.1 | Calcium-binding EF-hand family protein. encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium. | 0 |
| RefSeq | XP_004307987.1 | PREDICTED: calcineurin B-like protein 4 [Fragaria vesca subsp. vesca] | 0 |
| O81223 | Calcineurin B-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=CBL4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2MIS5 | Calcineurin B-like protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology