Basic Information
Locus ID:
nbisL1-mrna-16773
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000159F_pilon | 2091420 | 2092613 | + | nbisL1-mrna-16773 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 45,277.69 Da | 37.98 | 92.80 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 14 | 48 | 3.1E-5 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 54 | 372 | 4.18E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 75 | 5.23E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 78 | 5.8E-6 | - |
| SMART | SM00256 | fbox_2 | 17 | 57 | 3.2E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 57 | 11.749494 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19970.1 | 0 | |
| RefSeq | XP_021646253.1 | uncharacterized protein LOC110639559 [Hevea brasiliensis] | 0 |
| TrEMBL | B9STN6 | F-box domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0826150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30255830 |
| Apiaceae | Apium graveolens | 1 | Ag4G01547 |
| Arecaceae | Cocos nucifera | 1 | scaffold010033G000050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721079 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G23568 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G19970.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013658m.g.v1.0, Thhalv10013905m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g24410.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g043430.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1015 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2519, BH02.2622, CH02.2854 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0026530, gene-QOZ80_1BG0076810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0275680.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G015780, Oco02G016110 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g45900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G211500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604937, Pt_Chr0604945 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G014150, Chr03G012620, Chr05G019520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G396800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG034920, gene_TRIDC3BG039310 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G233100.1, TraesCS3B02G262500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb158500_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29088 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8322 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g12030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.370 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13168, nbisL1-mrna-13196 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3739 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16773 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000033l.80 |
| Salicaceae | Populus euphratica | 1 | populus_peu05118 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611972 |
| Solanaceae | Solanum chilense | 1 | SOLCI001836800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028009 |