Basic Information
Locus ID:
nbisL1-mrna-16769
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
GLT1
Description:
glutamate synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000649F_pilon | 1977036 | 1994048 | - | nbisL1-mrna-16769 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 285,348.16 Da | 36.00 | 85.74 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00982 | gltB_C | 1388 | 1637 | 2.76981E-149 | IPR002489 |
| CDD | cd16454 | RING-H2_PA-TM-RING | 2544 | 2587 | 7.74447E-18 | - |
| CDD | cd00713 | GltS | 121 | 553 | 0.0 | - |
| CDD | cd02808 | GltS_FMN | 961 | 1340 | 2.59262E-169 | IPR002932 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 2277 | 2321 | 9.0E-11 | IPR025287 |
| Pfam | PF04898 | Glutamate synthase central domain | 607 | 892 | 1.6E-110 | IPR006982 |
| Pfam | PF14691 | Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster | 1749 | 1844 | 3.9E-21 | IPR028261 |
| Pfam | PF01493 | GXGXG motif | 1411 | 1597 | 4.5E-86 | IPR002489 |
| Pfam | PF01645 | Conserved region in glutamate synthase | 959 | 1327 | 3.9E-152 | IPR002932 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 2386 | 2452 | 5.2E-6 | IPR032872 |
| Pfam | PF00310 | Glutamine amidotransferases class-II | 121 | 558 | 9.9E-180 | IPR017932 |
| Pfam | PF07992 | Pyridine nucleotide-disulphide oxidoreductase | 1857 | 2183 | 1.7E-23 | IPR023753 |
| Pfam | PF13639 | Ring finger domain | 2544 | 2587 | 2.5E-11 | IPR001841 |
| SUPERFAMILY | SSF69336 | Alpha subunit of glutamate synthase, C-terminal domain | 1380 | 1645 | 5.49E-98 | IPR036485 |
| SUPERFAMILY | SSF57850 | RING/U-box | 2539 | 2596 | 9.51E-18 | - |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 1854 | 2195 | 8.42E-59 | IPR036188 |
| SUPERFAMILY | SSF46548 | alpha-helical ferredoxin | 1710 | 1867 | 2.09E-34 | - |
| SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 121 | 561 | 8.49E-147 | IPR029055 |
| SUPERFAMILY | SSF51395 | FMN-linked oxidoreductases | 602 | 1362 | 9.62E-249 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 1857 | 1965 | 7.0E-14 | - |
| Gene3D | G3DSA:3.50.50.60 | - | 1966 | 2127 | 3.6E-31 | IPR036188 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 588 | 943 | 9.3E-131 | IPR013785 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 944 | 1382 | 2.0E-202 | IPR013785 |
| Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 121 | 570 | 5.9E-194 | IPR029055 |
| Gene3D | G3DSA:1.10.1060.10 | - | 1687 | 1856 | 9.8E-41 | IPR009051 |
| Gene3D | G3DSA:2.160.20.60 | - | 1384 | 1654 | 6.3E-109 | IPR036485 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2510 | 2591 | 3.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 2545 | 2586 | 5.4E-6 | IPR001841 |
| TIGRFAM | TIGR01317 | GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit | 1712 | 2197 | 9.2E-223 | IPR006005 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 2545 | 2587 | 12.651561 | IPR001841 |
| ProSiteProfiles | PS51278 | Glutamine amidotransferase type 2 domain profile. | 121 | 535 | 22.894758 | IPR017932 |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 2002 | 2016 | 4.7E-22 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1858 | 1880 | 4.7E-22 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1924 | 1934 | 4.7E-22 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1881 | 1894 | 4.7E-22 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2214 | 2238 | - | - |
| Coils | Coil | Coil | 2207 | 2234 | - | - |
| Coils | Coil | Coil | 1662 | 1682 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
GO:0003824 (catalytic activity)
GO:0015930 (glutamate synthase activity)
GO:0016491 (oxidoreductase activity)
GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors)
GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor)
GO:0030247 (polysaccharide binding)
GO:0051536 (iron-sulfur cluster binding)
KEGG Pathway
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism)
map00250 (Alanine, aspartate and glutamate metabolism)
ko00910 (Nitrogen metabolism)
map00910 (Nitrogen metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53460.1 | NADH-dependent glutamate synthase 1. NADH-dependent glutamate synthase | 0 |
| RefSeq | XP_021682260.1 | glutamate synthase 1 [NADH], chloroplastic isoform X1 [Hevea brasiliensis] | 0 |
| Q9LV03 | Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GLT1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7J6HV66 | Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cannabis sativa OX=3483 GN=G4B88_023716 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13893, jg2196 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3295 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018647 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15107, Sbi_jg55939 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26420 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020044 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01374, Sgl01440, Sgl01441, Sgl06449, Sgl06528 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000510, gene:ENSEOMG00000031859 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0004880, CQ.Regalona.r1.3BG0004920 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30185180 |
| Apiaceae | Apium graveolens | 2 | Ag10G02525, AgUnG00467 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G013130, scaffold000561G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708325, gene-LOC103713334 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2833.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G12439 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G53460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012414m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g15593.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g016600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1606 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1742 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g12650, gene.Cymno12g01560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0052s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g24920, gene.Thate09g14990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2897 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041146 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37740, Lb7G32942 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2769, AH05.1457, BH02.2852, BH05.1626, CH02.3687 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0028780, gene-QOZ80_1BG0079010 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0280530.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_054594, gene-QYE76_054602 |
| Poaceae | Oryza coarctata | 4 | Oco01G017400, Oco02G017650, Oco09G016320, Oco10G016130 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g48960.1, LOC_Os05g48200.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G233100, gene-BS78_03G236800 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602367 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G012560, Chr03G013590, Chr08G013750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G442300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG039670, gene_TRIDC3BG044820 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G266300.1, TraesCS3B02G299800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb156610_P002, Zm00001eb295220_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12580, nbis-gene-26118 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10886, Zma_g8437 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1967 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g13790, gene.Posoc09g09130 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.622, evm.TU.Scaffold_2_RagTag.1648 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3559, nbisL1-mrna-7507 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2555, nbisL1-mrna-921 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14013, nbisL1-mrna-5641 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.314, evm.TU.utg000012l.386 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005974, Maker00011451 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2744, nbisL1-mrna-8412 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16769, nbisL1-mrna-743 |
| Salicaceae | Populus euphratica | 3 | populus_peu28067, populus_peu29502, populus_peu29503 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632063 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013700 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5260 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1506 |
| Zosteraceae | Zostera marina | 2 | Zosma01g06270.v3.1, Zosma01g22390.v3.1 |