Basic Information
Locus ID:
nbisL1-mrna-16769
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5188441 | 5204752 | - | nbisL1-mrna-16769 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.81 | 191,169.38 Da | 44.57 | 88.97 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02892 | SQCY_1 | 1031 | 1683 | 0.0 | IPR018333 |
| Pfam | PF04192 | Utp21 specific WD40 associated putative domain | 671 | 899 | 7.2E-59 | IPR007319 |
| Pfam | PF00400 | WD domain, G-beta repeat | 549 | 585 | 4.4E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 295 | 0.13 | IPR001680 |
| Pfam | PF13249 | Squalene-hopene cyclase N-terminal domain | 1032 | 1333 | 1.9E-39 | IPR032697 |
| Pfam | PF13243 | Squalene-hopene cyclase C-terminal domain | 1347 | 1684 | 2.1E-50 | IPR032696 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 20 | 342 | 1.99E-42 | IPR036322 |
| SUPERFAMILY | SSF48239 | Terpenoid cyclases/Protein prenyltransferases | 1270 | 1688 | 8.63E-121 | IPR008930 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 224 | 626 | 9.16E-48 | IPR036322 |
| SUPERFAMILY | SSF48239 | Terpenoid cyclases/Protein prenyltransferases | 1054 | 1341 | 1.33E-109 | IPR008930 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 313 | 7.5E-224 | IPR015943 |
| Gene3D | G3DSA:1.50.10.20 | - | 1052 | 1345 | 7.8E-146 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 629 | 7.5E-224 | IPR015943 |
| Gene3D | G3DSA:1.50.10.20 | - | 1421 | 1655 | 5.8E-22 | - |
| SMART | SM00320 | WD40_4 | 82 | 119 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 546 | 585 | 3.0E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 464 | 502 | 0.04 | IPR001680 |
| SMART | SM00320 | WD40_4 | 170 | 209 | 0.033 | IPR001680 |
| SMART | SM00320 | WD40_4 | 589 | 627 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 126 | 167 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 296 | 0.025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 342 | 0.0053 | IPR001680 |
| SMART | SM00320 | WD40_4 | 505 | 543 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 253 | 2.1E-5 | IPR001680 |
| TIGRFAM | TIGR01787 | squalene_cyclas: squalene/oxidosqualene cyclases | 1030 | 1684 | 8.1E-232 | IPR018333 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 553 | 586 | 16.289801 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 154 | 176 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 295 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 470 | 511 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 262 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 553 | 586 | 13.39558 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 264 | 295 | 9.783781 | - |
| ProSitePatterns | PS01074 | Terpene synthases signature. | 1537 | 1551 | - | IPR002365 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 572 | 586 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 673 | - | - |
| SFLD | SFLDG01016 | Prenyltransferase Like 2 | 1022 | 1686 | 0.0 | IPR018333 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04940.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_002534411.2 | U3 small nucleolar RNA-associated protein 21 homolog isoform X2 [Ricinus communis] | 0 |
| Q2XPU6 | Cycloartenol synthase OS=Ricinus communis OX=3988 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KH86 | Utp21 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12839, jg29849 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24889 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024352 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g143360 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42115, Sbi_jg44687 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27408 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006085 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl78992, Sgl78993, Sgl81444, Sgl81445 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000401, gene:ENSEOMG00000002482 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0012000, CQ.Regalona.r1.6BG0012710 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30148330 |
| Apiaceae | Apium graveolens | 1 | Ag10G01067 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G018740 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704318 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2316.V1.1, AsparagusV1_05.3308.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G04057 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028405m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04020.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g038330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2674 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2807 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g09420 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0063s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g00320 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1205 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013815, Pov_00024817 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16845 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.2305, AH06.2437, BH06.2236, CH06.2454 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0546270, gene-QOZ80_6BG0499640 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0745010.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036701 |
| Poaceae | Oryza coarctata | 2 | Oco11G013750, Oco12G013930 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g43690.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G205900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401603 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G030800, Chr05G008540, Chr10G018890, Chr11G003690 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G101900, Tel7E01G897200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG072550, gene_TRIDC7BG068730 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G517200.1, TraesCS7B02G433500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb386980_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40913 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g33135 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1705, evm.TU.LG20.182 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g20890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.14 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12824 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3362 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16463 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.6 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014733 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16769 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14420 |
| Salicaceae | Populus euphratica | 1 | populus_peu11233 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644782 |
| Solanaceae | Solanum chilense | 1 | SOLCI002046900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007990 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.20149_chr07_+, gene_12896, gene_16102 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0051 |
| Zosteraceae | Zostera marina | 1 | Zosma01g23810.v3.1 |