Basic Information
Locus ID:
nbisL1-mrna-16764
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
atilp1,ilp1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 19789566 | 19800340 | + | nbisL1-mrna-16764 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 102,690.64 Da | 44.30 | 62.14 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07967 | C3HC zinc finger-like | 79 | 206 | 1.1E-32 | IPR012935 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 757 | 796 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 938 | 963 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 757 | 782 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 418 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17210.1 | IAP-like protein 1. | 0 |
| RefSeq | XP_021640679.1 | uncharacterized protein LOC110635593 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2P2MVD4 | C3HC-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24308 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12695 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007438 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18973, Sbi_jg37425 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5266 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015183 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl22430, Sgl22431, Sgl27580, Sgl27581, Sgl27582 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008412, gene:ENSEOMG00000030998 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0015990, CQ.Regalona.r1.4BG0016300 |
| Apiaceae | Apium graveolens | 3 | Ag2G00061, AgUnG00502, AgUnG01240 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G020120, scaffold004540G000020 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103710517, gene-LOC103723898, gene-LOC120104082 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1860.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G21791, Ftri7G15384 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G17210.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006705m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g15350.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g031660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0178 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0259 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g04510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g18830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4682 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.46 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008394 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23229 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.128, AH03.231, BH03.297, BH03.3867, CH01.484, CH03.366 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0213490, gene-QOZ80_3BG0258600 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0153250.1, HORVU.MOREX.r3.5HG0516650.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_042489, gene-QYE76_061353 |
| Poaceae | Oryza coarctata | 3 | Oco06G026270, Oco13G001460, Oco14G001570 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g57160.1, LOC_Os07g05610.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G058200, gene-BS78_02G034300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303531 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G003380, Chr04G006080, Chr12G035240, Chr12G035520 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G466100, Tel5E01G664500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG032980, gene_TRIDC2BG039290 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G251900.2, TraesCS2B02G271800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb059900_P003, Zm00001eb300000_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35784 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g343, Zma_g4732, Zma_g5976 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1150 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g31840, gene.Posoc10g05140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.927 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16691, nbisL1-mrna-16764 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10142 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17233 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.103 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012257 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8659 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9146 |
| Salicaceae | Populus euphratica | 2 | populus_peu08087, populus_peu22158 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617690 |
| Solanaceae | Solanum chilense | 1 | SOLCI002041400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025877 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.28605_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2056 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23630.v3.1 |