Basic Information
Locus ID:
nbisL1-mrna-16745
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5399511 | 5401997 | + | nbisL1-mrna-16745 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.30 | 70,018.26 Da | 45.42 | 100.93 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 227 | 250 | 1.5 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 547 | 568 | 1.1 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 252 | 275 | 0.014 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 491 | 513 | 0.91 | IPR001611 |
| Pfam | PF12937 | F-box-like | 69 | 103 | 1.2E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 61 | 104 | 1.26E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 178 | 653 | 1.73E-39 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 149 | 266 | 6.4E-20 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 69 | 104 | 7.0E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 267 | 459 | 1.3E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 460 | 655 | 3.9E-30 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 279 | 304 | 1.2E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 359 | 384 | 1.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 623 | 648 | 250.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 545 | 570 | 0.048 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 253 | 278 | 2.1E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 227 | 252 | 3.8E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 438 | 463 | 310.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 411 | 436 | 74.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 597 | 622 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 518 | 543 | 98.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 491 | 516 | 0.36 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 201 | 226 | 1.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 385 | 410 | 3.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 571 | 595 | 190.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_011017769.1 | PREDICTED: EIN3-binding F-box protein 1-like [Populus euphratica] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JKB4 | EIN3-binding F-box protein 1-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology