Basic Information
Locus ID:
nbisL1-mrna-16739
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000159F_pilon | 1904075 | 1908077 | + | nbisL1-mrna-16739 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 98,191.04 Da | 35.94 | 90.47 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 584 | 857 | 6.82933E-95 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 319 | 357 | 0.0039 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 579 | 851 | 3.0E-47 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 109 | 145 | 1.7E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 362 | 420 | 2.3E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 21 | 58 | 1.3E-5 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 321 | 430 | 1.43E-19 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 555 | 854 | 4.32E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 39 | 303 | 6.12E-44 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 541 | 655 | 3.3E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 319 | 442 | 7.1E-33 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 656 | 879 | 3.4E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 20 | 315 | 2.7E-73 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 407 | 431 | 32.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 131 | 156 | 48.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 383 | 406 | 37.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 107 | 130 | 0.0081 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 180 | 203 | 23.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 578 | 858 | 1.9E-44 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 578 | 858 | 41.785065 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 584 | 606 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 703 | 715 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 893 | 913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 468 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_002324686.4 | receptor-like kinase TMK4 [Populus trichocarpa] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2WKZ6 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_029118 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology