Basic Information
Locus ID:
nbisL1-mrna-16735
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000649F_pilon | 1729081 | 1730792 | - | nbisL1-mrna-16735 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 23,638.08 Da | 23.78 | 74.08 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 16 | 77 | 2.69142E-9 | IPR002048 |
| CDD | cd00051 | EFh | 61 | 118 | 3.88711E-10 | IPR002048 |
| CDD | cd00051 | EFh | 92 | 154 | 4.07223E-20 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 16 | 77 | 9.6E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 90 | 153 | 8.2E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 8 | 182 | 1.36E-44 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 7 | 160 | 2.2E-46 | - |
| SMART | SM00054 | efh_1 | 16 | 44 | 0.004 | IPR002048 |
| SMART | SM00054 | efh_1 | 92 | 120 | 2.4E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 52 | 80 | 0.8 | IPR002048 |
| SMART | SM00054 | efh_1 | 128 | 156 | 3.2E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 48 | 83 | 9.324862 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 12 | 47 | 13.369694 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 124 | 159 | 11.500702 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 88 | 123 | 15.936071 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 137 | 149 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 61 | 73 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 101 | 113 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_012070221.1 | probable calcium-binding protein CML18 [Jatropha curcas] | 0 |
| Q9M8U1 | Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067L4T3 | Calcium-binding protein CML18 OS=Jatropha curcas OX=180498 GN=JCGZ_02535 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology