Basic Information
Locus ID:
nbisL1-mrna-16734
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5474376 | 5484008 | - | nbisL1-mrna-16734 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 134,997.59 Da | 40.02 | 78.98 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 921 | 955 | 8.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 459 | 493 | 4.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 337 | 536 | 1.39E-24 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 481 | 960 | 8.63E-44 | IPR011047 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 896 | 1119 | 5.23E-16 | IPR011048 |
| Gene3D | G3DSA:2.130.10.10 | - | 968 | 1108 | 4.7E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 575 | 686 | 1.3E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 323 | 574 | 3.4E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 744 | 967 | 1.7E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 834 | 870 | 84.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 446 | 5.3 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 8.3E-15 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 3.6E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 916 | 955 | 4.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1007 | 1048 | 82.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 385 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 629 | 670 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 873 | 913 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 542 | 583 | 61.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 586 | 626 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 496 | 537 | 0.0084 | IPR001680 |
| SMART | SM00320 | WD40_4 | 452 | 493 | 1.3E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 459 | 502 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.22414 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.795317 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 923 | 955 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 923 | 955 | 10.100143 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.2 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_027333454.1 | topless-related protein 4-like isoform X1 [Abrus precatorius] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B8JQ89 | topless-related protein 4-like isoform X1 OS=Abrus precatorius OX=3816 GN=LOC113848237 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology