Basic Information
Locus ID:
nbisL1-mrna-16728
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 19193900 | 19217606 | + | nbisL1-mrna-16728 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 185,936.42 Da | 42.60 | 96.92 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 1033 | 1279 | 6.40702E-80 | IPR044726 |
| CDD | cd17870 | GPN1 | 62 | 302 | 1.96355E-154 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1302 | 1522 | 2.13457E-113 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 549 | 718 | 6.04955E-59 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 742 | 942 | 2.84249E-104 | - |
| Pfam | PF00005 | ABC transporter | 1321 | 1469 | 4.2E-28 | IPR003439 |
| Pfam | PF03029 | Conserved hypothetical ATP binding protein | 66 | 304 | 8.2E-76 | IPR004130 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1033 | 1237 | 1.2E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 760 | 895 | 1.4E-17 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 584 | 698 | 1.2E-14 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 63 | 301 | 3.52E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 740 | 965 | 2.02E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1294 | 1537 | 1.56E-71 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 551 | 722 | 1.96E-22 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1034 | 1284 | 1.57E-41 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 61 | 319 | 1.5E-92 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1026 | 1285 | 3.4E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1287 | 1540 | 1.4E-86 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 536 | 730 | 5.3E-32 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 734 | 991 | 8.0E-73 | IPR027417 |
| SMART | SM00382 | AAA_5 | 60 | 219 | 0.11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1330 | 1523 | 3.8E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 769 | 947 | 6.8E-9 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 582 | 710 | 18.8771 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1035 | 1267 | 27.488541 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1304 | 1538 | 18.474184 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 742 | 966 | 22.395733 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 1441 | 1455 | - | IPR017871 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 868 | 882 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 343 | - | - |
| Coils | Coil | Coil | 23 | 43 | - | - |
| Coils | Coil | Coil | 308 | 347 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30400.1 | multidrug resistance-associated protein 1. glutathione S-conjugate transporting ATPase (AtMRP1) mRNA. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021643983.1 | ABC transporter C family member 12-like [Hevea brasiliensis] | 0 |
| Q9C8G9 | ABC transporter C family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCC1 PE=1 SV=1 | 0 | |
| TrEMBL | B9SKU1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20807, jg20810, jg22314, jg25043 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_22572, gene_22584 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016406 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g153720, BVRB_8g187450 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg36010, Sbi_jg555 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4098 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028238 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl22438, Sgl27574 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009287, gene:ENSEOMG00000011228 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0013280, CQ.Regalona.r1.8BG0012520 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30073940, pistato.v30076000, pistato.v30076020 ... |
| Apiaceae | Apium graveolens | 5 | Ag11G04943, Ag11G04944, Ag11G04945, Ag11G05079, Ag6G01147 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G008000 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103695628, gene-LOC103723484, gene-LOC120108582 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.10.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri15G20156, Ftri16G15844, Ftri16G18074, Ftri18G30723 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G30400.1, AT1G30410.1, AT1G30420.1, AT2G34660.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10006546m.g.v1.0, Thhalv10006558m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g26230.v2.2, Sp1g26240.v2.2, Sp4g16940.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB03g016090.2N, BniB03g034370.2N, BniB03g034390.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq04G0526, Ceq04G0529, Ceq04G0531, Ceq04G0535, Ceq04G0536 |
| Casuarinaceae | Casuarina glauca | 5 | Cgl04G0626, Cgl04G0627, Cgl04G0628, Cgl04G0629, Cgl04G0631 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g02980, gene.Cymno09g03070 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2478s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate05g03550, gene.Thate05g03560, gene.Thate05g03570 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG12.168, evm.TU.LG12.169, evm.TU.LG12.175 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00013067, Pov_00013071, Pov_00013074 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G14426, Lb2G14428, Lb2G14429 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2326, BH09.2523, CH09.2760 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0303600, gene-QOZ80_4BG0334490 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0195130.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_046338, gene-QYE76_047328 |
| Poaceae | Oryza coarctata | 2 | Oco07G016200, Oco08G015700 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g52900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G232300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301130, Pt_Chr0307470 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G004610, Chr24G007140, Chr25G002910, Chr30G002860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G784600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG059570, gene_TRIDC1BG068180 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G404300.1, TraesCS1B02G433800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb070400_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22897, nbis-gene-5877 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20470, Zma_g21983 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1143, evm.TU.LG05.1684 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc08g07310, gene.Posoc08g07320, gene.Posoc08g07330 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.950 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-16723, nbisL1-mrna-16726, nbisL1-mrna-16728 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-19450, nbisL1-mrna-19451, nbisL1-mrna-7599 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-17254, nbisL1-mrna-17256, nbisL1-mrna-17257 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000025l.119, evm.TU.utg000025l.121 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00012189, Maker00012267 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-8645, nbisL1-mrna-8646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-9170, nbisL1-mrna-9171 |
| Salicaceae | Populus euphratica | 5 | populus_peu10152, populus_peu17830, populus_peu17836 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609402, gene-LOC132627114 |
| Solanaceae | Solanum chilense | 5 | SOLCI001326800, SOLCI001326900, SOLCI001327100 ... |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007056, gene-LOC107028302 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9699 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G1122, TC06G1128 |
| Zosteraceae | Zostera marina | 3 | Zosma03g34800.v3.1, Zosma256g00010.v3.1, Zosma837g00010.v3.1 |