Basic Information
Locus ID:
nbisL1-mrna-16685
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5928834 | 5932137 | - | nbisL1-mrna-16685 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 80,108.34 Da | 45.04 | 98.38 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 342 | 641 | 9.342E-161 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 42 | 338 | 9.16346E-155 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 347 | 637 | 3.5E-26 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 49 | 332 | 1.3E-9 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 41 | 338 | 7.06E-41 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 341 | 642 | 1.65E-46 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 340 | 643 | 3.8E-50 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 41 | 339 | 1.3E-32 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 342 | 642 | 30.748447 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 42 | 339 | 28.328657 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58170.1 | SHV3-like 5. | 0 |
| RefSeq | XP_034907754.1 | glycerophosphodiester phosphodiesterase GDPDL6-like [Populus alba] | 0 |
| Q9LVN0 | Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana OX=3702 GN=GDPDL7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A836IXK2 | glycerophosphodiester phosphodiesterase OS=Salix suchowensis OX=1278906 GN=IMY05_006G0149400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology