Basic Information
Locus ID:
nbisL1-mrna-16678
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000649F_pilon | 1371375 | 1373968 | - | nbisL1-mrna-16678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 35,438.79 Da | 37.74 | 91.90 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 119 | 201 | 5.5E-7 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 207 | 6.96E-23 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 214 | 326 | 1.46E-17 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 212 | 313 | 8.4E-25 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 97 | 207 | 3.9E-20 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 41 | 95 | 1.6E-8 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_048560390.1 | pyruvate decarboxylase 2-like [Triticum urartu] | 0 |
| Q9FFT4 | Pyruvate decarboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6RIM4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology