Basic Information
Locus ID:
nbisL1-mrna-16662
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000649F_pilon | 1270894 | 1275508 | - | nbisL1-mrna-16662 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 65,868.72 Da | 44.63 | 113.97 | 0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13136 | MATE_DinF_like | 103 | 553 | 1.2077E-85 | IPR044644 |
| Pfam | PF01554 | MatE | 343 | 454 | 2.1E-8 | IPR002528 |
| TIGRFAM | TIGR00797 | matE: MATE efflux family protein | 110 | 459 | 5.3E-62 | IPR002528 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 76 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38330.1 | MATE efflux family protein. | 0 |
| RefSeq | XP_010653387.1 | PREDICTED: protein DETOXIFICATION 44, chloroplastic [Vitis vinifera] | 0 |
| Q84K71 | Protein DETOXIFICATION 44, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DTX44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2N9G9D1 | Protein DETOXIFICATION OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24074 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology