Basic Information
Locus ID:
nbisL1-mrna-16629
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000649F_pilon | 1089370 | 1090114 | - | nbisL1-mrna-16629 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.15 | 12,262.99 Da | 36.60 | 73.64 | -0.59 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01830.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021893895.1 | - | 0 |
| Q9LZW3 | U-box domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=PUB16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6LYW3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2505 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.551 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4646 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2095 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9639 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17777 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16628, nbisL1-mrna-16629 |