Basic Information
Locus ID:
nbisL1-mrna-16609
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Serine threonine-protein kinase STN8
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000649F_pilon | 991968 | 994876 | - | nbisL1-mrna-16609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 62,343.63 Da | 38.02 | 96.65 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 365 | 543 | 9.7E-16 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 213 | 544 | 1.44E-26 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 361 | 545 | 2.6E-39 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 202 | 325 | 5.5E-21 | - |
| SMART | SM00220 | serkin_6 | 215 | 543 | 1.9E-9 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 215 | 543 | 20.061106 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 370 | 382 | - | IPR008271 |
| Coils | Coil | Coil | 476 | 496 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01920.1 | Protein kinase superfamily protein. Chloroplast thylakoid protein kinase STN8 is specific in phosphorylation of N-terminal threonine residues in D1, D2 and CP43 proteins, and Thr-4 in PsbH protein of photosystem II. Phosphorylation of Thr-4 in the wild type required both light and prior phosphorylation at Thr-2. | 0 |
| RefSeq | XP_011018991.1 | PREDICTED: serine/threonine-protein kinase STN8, chloroplastic-like [Populus euphratica] | 0 |
| Q9LZV4 | Serine/threonine-protein kinase STN8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STN8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KBQ9 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3152 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20435 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031562 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g156770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2128, Sbi_jg34375 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2639 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005856 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl71136, Sgl71139, Sgl74719, Sgl74722 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000008187, gene:ENSEOMG00000037311 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0023230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30269350 |
| Apiaceae | Apium graveolens | 1 | Ag8G00014 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G004700 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706313 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3334.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G30258 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G01920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013451m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g41170.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g000080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0876 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0893 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g12770 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1320s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g06520 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.851 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002588 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09537 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2017, BH05.2155, CH05.2227 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5AG0369240, gene-QOZ80_5AG0369700 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0070840.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_014066, gene-QYE76_014093 |
| Poaceae | Oryza coarctata | 2 | Oco09G012320, Oco10G012440 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g40180.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G183100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504556, Pt_Chr0702120 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G018400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G487600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG044750, gene_TRIDC1BG050640 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G301400.1, TraesCS1B02G311200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb290720_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-14254 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26996 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.201, evm.TU.LG15.763 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g27130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.528 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4663 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2080 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9656 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.639 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005116 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2621 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16609 |
| Salicaceae | Populus euphratica | 2 | populus_peu11525, populus_peu25249 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606954 |
| Solanaceae | Solanum chilense | 1 | SOLCI004774200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002491 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.1639_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0961 |
| Zosteraceae | Zostera marina | 1 | Zosma03g30590.v3.1 |