Basic Information
Locus ID:
nbisL1-mrna-16588
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 16667892 | 16675091 | + | nbisL1-mrna-16588 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 95,769.49 Da | 61.47 | 69.31 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 788 | 828 | 8.88493E-19 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 786 | 833 | 2.0E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 773 | 834 | 5.18E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 774 | 839 | 1.4E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 789 | 828 | 10.733671 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 435 | - | - |
| Coils | Coil | Coil | 717 | 744 | - | - |
| Coils | Coil | Coil | 236 | 263 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_021658463.1 | uncharacterized protein LOC110648515 isoform X3 [Hevea brasiliensis] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9V1P9 | RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_11G153300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology