Basic Information
Locus ID:
nbisL1-mrna-16586
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 16600999 | 16608389 | - | nbisL1-mrna-16586 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 110,050.32 Da | 38.09 | 79.78 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 647 | 687 | 6.98863E-19 | - |
| Pfam | PF16135 | Tify domain binding domain | 581 | 631 | 2.7E-15 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 648 | 689 | 4.0E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 395 | 450 | 8.1E-16 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 631 | 690 | 1.01E-17 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 730 | 787 | 5.76E-7 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 635 | 711 | 1.8E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 731 | 792 | 1.0E-8 | IPR013083 |
| SMART | SM00249 | PHD_3 | 647 | 688 | 1.1E-12 | IPR001965 |
| SMART | SM00249 | PHD_3 | 734 | 790 | 0.14 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 645 | 690 | 10.5758 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 648 | 687 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 57 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021674551.1 | uncharacterized protein LOC110660522 [Hevea brasiliensis] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9V1E1 | PHD-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_11G153000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology