Basic Information
Locus ID:
nbisL1-mrna-16581
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Contains the following InterPro domains Glycoside hydrolase, family 18, catalytic domain (InterPro IPR001223), Chitinase II (InterPro IPR011583), Glycoside hydrolase, catalytic core (InterPro IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro IPR013781)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000159F_pilon | 894680 | 897834 | + | nbisL1-mrna-16581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.06 | 39,708.27 Da | 25.48 | 82.23 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 24 | 358 | 1.52147E-143 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 30 | 352 | 5.3E-85 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 258 | 323 | 6.81E-12 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 29 | 353 | 2.0E-71 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 40 | 354 | 2.0E-116 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 257 | 323 | 2.0E-116 | IPR029070 |
| SMART | SM00636 | 2g34 | 26 | 352 | 2.3E-101 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 26 | 367 | 72.740883 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 132 | 140 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_034907746.1 | class V chitinase-like [Populus alba] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YJ21 | GH18 domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_012284 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology