Basic Information
Locus ID:
nbisL1-mrna-16573
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000159F_pilon | 852255 | 855678 | - | nbisL1-mrna-16573 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 80,143.42 Da | 40.61 | 96.63 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 41 | 337 | 1.56064E-156 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 341 | 640 | 2.16933E-156 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 76 | 331 | 6.9E-8 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 346 | 636 | 4.7E-25 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 40 | 337 | 3.4E-40 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 340 | 641 | 5.23E-46 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 339 | 642 | 3.6E-47 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 40 | 338 | 1.1E-31 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 41 | 338 | 29.774035 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 341 | 641 | 29.473591 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58170.1 | SHV3-like 5. | 0 |
| RefSeq | XP_034907754.1 | glycerophosphodiester phosphodiesterase GDPDL6-like [Populus alba] | 0 |
| Q9LVN0 | Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana OX=3702 GN=GDPDL7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A836IXK2 | glycerophosphodiester phosphodiesterase OS=Salix suchowensis OX=1278906 GN=IMY05_006G0149400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology