Basic Information
Locus ID:
nbisL1-mrna-16550
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 7037710 | 7041190 | + | nbisL1-mrna-16550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 95,629.68 Da | 35.99 | 94.00 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 556 | 829 | 1.89768E-94 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 21 | 58 | 1.3E-5 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 364 | 420 | 1.6E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 319 | 357 | 5.2E-4 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 553 | 824 | 4.5E-48 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 109 | 146 | 1.6E-8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 539 | 840 | 1.22E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 320 | 430 | 6.46E-20 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 35 | 301 | 1.62E-46 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 20 | 315 | 6.1E-75 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 628 | 851 | 4.1E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 510 | 627 | 2.1E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 319 | 443 | 2.8E-32 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 84 | 106 | 360.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 550 | 830 | 2.6E-44 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 107 | 130 | 0.0087 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 180 | 203 | 8.3 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 131 | 156 | 77.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 383 | 406 | 50.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 407 | 431 | 89.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 550 | 830 | 41.728527 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 675 | 687 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 556 | 578 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 474 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_011017684.1 | PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2WKZ6 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_029118 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology