Basic Information
Locus ID:
nbisL1-mrna-16549
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000159F_pilon | 719267 | 721662 | - | nbisL1-mrna-16549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 14,580.39 Da | 33.17 | 75.53 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 14 | 75 | 4.98039E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 13 | 75 | 3.5E-9 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 5 | 84 | 1.06E-13 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 2 | 128 | 1.8E-14 | - |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 10 | 45 | 8.934325 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 46 | 81 | 9.687501 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 59 | 71 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18530.1 | EF hand calcium-binding protein family. | 0 |
| RefSeq | XP_021647621.1 | probable calcium-binding protein CML15 [Hevea brasiliensis] | 0 |
| Q9FZ75 | Probable calcium-binding protein CML15 OS=Arabidopsis thaliana OX=3702 GN=CML15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1R3G1L4 | Calcium-binding EF-hand OS=Corchorus capsularis OX=210143 GN=CCACVL1_29480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology