Basic Information
Locus ID:
nbisL1-mrna-16546
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 7075635 | 7078537 | - | nbisL1-mrna-16546 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.73 | 43,551.18 Da | 23.16 | 86.85 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 107 | 383 | 1.05283E-91 | - |
| Pfam | PF00069 | Protein kinase domain | 105 | 378 | 4.6E-42 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 83 | 381 | 1.62E-73 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 185 | 386 | 8.9E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 85 | 184 | 3.9E-27 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 101 | 387 | 37.431793 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 107 | 137 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 229 | 241 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17220.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_012085727.1 | probable serine/threonine-protein kinase PIX13 [Jatropha curcas] | 0 |
| Q9SII6 | Probable serine/threonine-protein kinase PIX13 OS=Arabidopsis thaliana OX=3702 GN=PIX13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2JDG9 | Uncharacterized protein MANES_12G008100 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.341 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13229, nbisL1-mrna-13231 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3717 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16746 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.225 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014961 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16545, nbisL1-mrna-16546 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14713 |
| Salicaceae | Populus euphratica | 1 | populus_peu11166 |