Basic Information
Locus ID:
nbisL1-mrna-16521
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Translocase of chloroplast 90
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000159F_pilon | 544177 | 553693 | - | nbisL1-mrna-16521 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 88,768.32 Da | 41.91 | 88.75 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04548 | AIG1 family | 172 | 306 | 4.1E-22 | IPR006703 |
| Pfam | PF11886 | Translocase of chloroplast 159/132, membrane anchor domain | 516 | 779 | 2.4E-116 | IPR024283 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 167 | 306 | 4.67E-19 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 142 | 385 | 2.1E-52 | IPR027417 |
| TIGRFAM | TIGR00993 | 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains | 56 | 780 | 2.3E-209 | IPR005690 |
| ProSiteProfiles | PS51720 | AIG1-type G domain profile. | 168 | 399 | 27.246414 | IPR006703 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 93 | - | - |
| Coils | Coil | Coil | 486 | 506 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20300.1 | Avirulence induced gene (AIG1) family protein. | 0 |
| RefSeq | XP_021682014.1 | translocase of chloroplast 90, chloroplastic [Hevea brasiliensis] | 0 |
| Q6S5G3 | Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TOC90 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K9C7 | AIG1-type G domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology