Basic Information
Locus ID:
nbisL1-mrna-16516
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 7345095 | 7346965 | + | nbisL1-mrna-16516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 36,372.23 Da | 33.35 | 91.89 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 269 | 313 | 6.37032E-19 | - |
| Pfam | PF13639 | Ring finger domain | 270 | 311 | 1.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 263 | 317 | 8.64E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 320 | 1.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 270 | 310 | 8.6E-7 | IPR001841 |
| SMART | SM00744 | ringv_2 | 269 | 311 | 0.0032 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 270 | 311 | 12.371254 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 61 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_012466321.1 | E3 ubiquitin-protein ligase At4g11680 [Gossypium raimondii] | 0 |
| Q8GUU2 | E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2IWY2 | RING-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.380 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13157 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3750 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16785 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.257 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014716 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16516 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14756, nbisL1-mrna-14757 |