Basic Information
Locus ID:
nbisL1-mrna-1650
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 16589083 | 16592864 | + | nbisL1-mrna-1650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 33,899.12 Da | 37.08 | 69.83 | -0.40 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021636012.1 | uncharacterized protein LOC110632192 isoform X6 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2P2KYI5 | F-box domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11040, jg5839, jg5840 |
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_14858, gene_14859, gene_14860, gene_14861, gene_14862 ... |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021062 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016074 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl03107, Sgl08231 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011489, gene:ENSEOMG00000029996 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0017830, CQ.Regalona.r1.3BG0018410 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30101480, pistato.v30240410 |
| Apiaceae | Apium graveolens | 1 | Ag9G01677 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G009230 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.255.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri12G15266, Ftri12G23975, Ftri6G23149 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G2045, Ceq07G0201 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl01G2223, Cgl01G2245, Cgl07G0198 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g17860 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.730 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00025145, Pov_00025146, Pov_00034238 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12113, Lb3G15954 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1853, BH01.2167, CH01.2263 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0126930, gene-QOZ80_2BG0182500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0040550.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_052959 |
| Poaceae | Oryza coarctata | 2 | Oco19G005430, Oco20G005360 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g40010.1, LOC_Os07g07520.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G213300 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G013350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G273100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG022030, gene_TRIDC1BG026060 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G144700.2, TraesCS1B02G162000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb222310_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19277, nbis-gene-19278 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16147 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.995, evm.TU.LG21.658 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1332, evm.TU.Scaffold_6_RagTag.940 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15734, nbisL1-mrna-1650, nbisL1-mrna-29648 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12462, nbisL1-mrna-15592 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2586, nbisL1-mrna-809 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.586, evm.TU.utg000019l.439 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002341, Maker00007918 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12216, nbisL1-mrna-15176 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18162, nbisL1-mrna-4332 |
| Salicaceae | Populus euphratica | 2 | populus_peu07609, populus_peu21642 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608734 |
| Solanaceae | Solanum chilense | 1 | SOLCI005009900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029218 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_7681, gene_7682 |