Basic Information
Locus ID:
nbisL1-mrna-16498
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000159F_pilon | 392731 | 401939 | - | nbisL1-mrna-16498 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 126,155.07 Da | 39.15 | 82.52 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 439 | 473 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 901 | 935 | 0.061 | IPR001680 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 905 | 1085 | 1.7E-12 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 318 | 516 | 6.1E-24 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 460 | 940 | 7.85E-41 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 555 | 664 | 9.1E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 310 | 554 | 5.5E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 758 | 1102 | 4.1E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 522 | 563 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 566 | 606 | 46.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 432 | 473 | 3.4E-4 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 7.0E-13 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 3.6E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 853 | 893 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 609 | 650 | 33.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 987 | 1028 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 808 | 850 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 896 | 935 | 1.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 476 | 517 | 0.013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 426 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 365 | 3.4 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.22414 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.028791 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 903 | 944 | 11.544415 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 903 | 937 | 9.572873 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 439 | 482 | 10.374778 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_020225686.1 | topless-related protein 4 isoform X2 [Cajanus cajan] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A834SNG4 | Topless-related protein 4-like isoform X1 OS=Senna tora OX=362788 GN=G2W53_038572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology